Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs11660684 | chr18:5273582 | T/C | 7.98E-10 | 214 | 9.05 | 12.82 | 4.85 | KM Plot |
| BLCA | rs11663119 | chr18:5281356 | T/G | 6.26E-7 | 215 | 8.95 | 13.07 | 4.85 | KM Plot |
| BLCA | rs11664657 | chr18:5275032 | G/C | 8.14E-10 | 214 | 9.03 | 13.07 | 4.85 | KM Plot |
| BLCA | rs116742819 | chr11:65099893 | A/C | 5.02E-14 | 212 | 9.03 | 12.68 | 2.17 | KM Plot |
| BLCA | rs117340862 | chr15:40909210 | G/T | 9.39E-5 | 214 | 10.6 | 6.52 | 4.55 | KM Plot |
| BLCA | rs117398381 | chr20:3168977 | G/A | 0 | 211 | 9.07 | 12.3 | 1.87 | KM Plot |
| BLCA | rs11875052 | chr18:5237575 | G/T | 0.000152 | 207 | 8.65 | 15.13 | 5.85 | KM Plot |
| BLCA | rs11877315 | chr18:5245247 | C/T | 1.64E-5 | 216 | 9.07 | 12.57 | 4.85 | KM Plot |
| BLCA | rs11877479 | chr18:5245228 | C/T | 1.48E-7 | 216 | 9.07 | 12.43 | 4.73 | KM Plot |
| BLCA | rs11994468 | chr8:50762138 | A/G | 2.59E-5 | 215 | 10.33 | 9.25 | 1.87 | KM Plot |
| BLCA | rs12033406 | chr1:229946421 | A/G | 1.63E-10 | 216 | 0.67 | 5.38 | 10.53 | KM Plot |
| BLCA | rs12114556 | chr8:50759305 | A/G | 2.43E-5 | 216 | 10.53 | 9.05 | 1.87 | KM Plot |
| BLCA | rs12114804 | chr8:50759450 | G/T | 2.43E-5 | 216 | 10.53 | 9.05 | 1.87 | KM Plot |
| BLCA | rs12117325 | chr1:103116024 | G/C | 0 | 214 | 9.07 | 13.1 | 2.07 | KM Plot |
| BLCA | rs12127834 | chr1:103118865 | A/C | 0 | 214 | 9.07 | 13.1 | 2.07 | KM Plot |